J3_9YPY_025
3D structure
- PDB id
- 9YPY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Ribosome with accommodated A-site tRNA, Structure V
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CAU*GCUUCU*AAGG
- Length
- 13 nucleotides
- Bulged bases
- 9YPY|1|5|U|4989, 9YPY|1|5|C|4990, 9YPY|1|5|G|5062
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9YPY|1|5|C|4970
9YPY|1|5|A|4971
9YPY|1|5|U|4972
*
9YPY|1|5|G|4986
9YPY|1|5|C|4987
9YPY|1|5|U|4988
9YPY|1|5|U|4989
9YPY|1|5|C|4990
9YPY|1|5|U|4991
*
9YPY|1|5|A|5060
9YPY|1|5|A|5061
9YPY|1|5|G|5062
9YPY|1|5|G|5063
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain B
- Ribosomal protein L3
- Chain P
- Large ribosomal subunit protein uL22
Coloring options: