J3_9YPZ_001
3D structure
- PDB id
- 9YPZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Vacant ribosome with P-site tRNA, substate 1, Structure Ia
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CAGCG*CGUACG*CCGG
- Length
- 15 nucleotides
- Bulged bases
- 9YPZ|1|5|C|159
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9YPZ|1|5|C|112
9YPZ|1|5|A|113
9YPZ|1|5|G|114
9YPZ|1|5|C|115
9YPZ|1|5|G|116
*
9YPZ|1|5|C|155
9YPZ|1|5|G|156
9YPZ|1|5|U|157
9YPZ|1|5|A|158
9YPZ|1|5|C|159
9YPZ|1|5|G|160
*
9YPZ|1|5|C|275
9YPZ|1|5|C|276
9YPZ|1|5|G|277
9YPZ|1|5|G|278
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain G
- 60S ribosomal protein L7a
- Chain L
- 60S ribosomal protein L13
- Chain N
- Ribosomal protein L15
- Chain h
- eL35
- Chain i
- 60S ribosomal protein L36
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