J3_9YPZ_006
3D structure
- PDB id
- 9YPZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Vacant ribosome with P-site tRNA, substate 1, Structure Ia
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CAGUC*GUGCG*CGAUG
- Length
- 15 nucleotides
- Bulged bases
- 9YPZ|1|5|C|704
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9YPZ|1|5|C|451
9YPZ|1|5|A|452
9YPZ|1|5|G|453
9YPZ|1|5|U|454
9YPZ|1|5|C|455
*
9YPZ|1|5|G|701
9YPZ|1|5|U|702
9YPZ|1|5|G|703
9YPZ|1|5|C|704
9YPZ|1|5|G|705
*
9YPZ|1|5|C|1292
9YPZ|1|5|G|1293
9YPZ|1|5|A|1294
9YPZ|1|5|U|1295
9YPZ|1|5|G|1296
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain E
- 60S ribosomal protein L6
- Chain e
- Ribosomal protein L32
- Chain f
- eL33
- Chain r
- eL28
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