J3_9YPZ_007

3D structure

PDB id

9YPZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Vacant ribosome with P-site tRNA, substate 1, Structure Ia

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGAACUA*UAG*CGAA

Length

14 nucleotides

Bulged bases

9YPZ|1|5|A|1534, 9YPZ|1|5|G|1641, 9YPZ|1|5|A|1642

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPZ|1|5|U|1531
9YPZ|1|5|G|1532
9YPZ|1|5|A|1533
9YPZ|1|5|A|1534
9YPZ|1|5|C|1535
9YPZ|1|5|U|1536
9YPZ|1|5|A|1537
*
9YPZ|1|5|U|1622
9YPZ|1|5|A|1623
9YPZ|1|5|G|1624
*
9YPZ|1|5|C|1640
9YPZ|1|5|G|1641
9YPZ|1|5|A|1642
9YPZ|1|5|A|1643

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain A

Ribosomal protein L8

Chain N

Ribosomal protein L15

Chain j

Ribosomal protein L37

Chain l

eL39