J3_9YPZ_011

3D structure

PDB id

9YPZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Vacant ribosome with P-site tRNA, substate 1, Structure Ia

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGAAGUG*CAA*UCUG

Length

14 nucleotides

Bulged bases

9YPZ|1|5|A|2396, 9YPZ|1|5|U|2398

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPZ|1|5|C|2393
9YPZ|1|5|G|2394
9YPZ|1|5|A|2395
9YPZ|1|5|A|2396
9YPZ|1|5|G|2397
9YPZ|1|5|U|2398
9YPZ|1|5|G|2399
*
9YPZ|1|5|C|2805
9YPZ|1|5|A|2806
9YPZ|1|5|A|2807
*
9YPZ|1|5|U|2819
9YPZ|1|5|C|2820
9YPZ|1|5|U|2821
9YPZ|1|5|G|2822

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain R

Ribosomal protein L19

Chain g

Large ribosomal subunit protein eL34