J3_9YPZ_023
3D structure
- PDB id
- 9YPZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Vacant ribosome with P-site tRNA, substate 1, Structure Ia
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CGGUUG*CCUUC*GCACCGCACGUUCGUG
- Length
- 27 nucleotides
- Bulged bases
- 9YPZ|1|5|U|4882, 9YPZ|1|5|A|4938, 9YPZ|1|5|C|4940, 9YPZ|1|5|A|4943, 9YPZ|1|5|C|4944, 9YPZ|1|5|U|4950
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9YPZ|1|5|C|4749
9YPZ|1|5|G|4750
9YPZ|1|5|G|4751
9YPZ|1|5|U|4752
9YPZ|1|5|U|4753
9YPZ|1|5|G|4754
*
9YPZ|1|5|C|4879
9YPZ|1|5|C|4880
9YPZ|1|5|U|4881
9YPZ|1|5|U|4882
9YPZ|1|5|C|4883
*
9YPZ|1|5|G|4936
9YPZ|1|5|C|4937
9YPZ|1|5|A|4938
9YPZ|1|5|C|4939
9YPZ|1|5|C|4940
9YPZ|1|5|G|4941
9YPZ|1|5|C|4942
9YPZ|1|5|A|4943
9YPZ|1|5|C|4944
9YPZ|1|5|G|4945
9YPZ|1|5|U|4946
9YPZ|1|5|U|4947
9YPZ|1|5|C|4948
9YPZ|1|5|G|4949
9YPZ|1|5|U|4950
9YPZ|1|5|G|4951
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain E
- 60S ribosomal protein L6
- Chain M
- 60S ribosomal protein L14
- Chain O
- Large ribosomal subunit protein uL13
- Chain f
- eL33
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