J3_9YPZ_029
3D structure
- PDB id
- 9YPZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Vacant ribosome with P-site tRNA, substate 1, Structure Ia
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UGGA*UUAAGA*UA
- Length
- 12 nucleotides
- Bulged bases
- 9YPZ|1|9|G|921
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9YPZ|1|9|U|682
9YPZ|1|9|G|683
9YPZ|1|9|G|684
9YPZ|1|9|A|685
*
9YPZ|1|9|U|917
9YPZ|1|9|U|918
9YPZ|1|9|A|919
9YPZ|1|9|A|920
9YPZ|1|9|G|921
9YPZ|1|9|A|922
*
9YPZ|1|9|U|1022
9YPZ|1|9|A|1023
Current chains
- Chain 9
- 18S ribosomal RNA
Nearby chains
- Chain HH
- 40S ribosomal protein S7
- Chain LL
- Ribosomal protein S11
- Chain NN
- Ribosomal protein S13
- Chain WW
- Ribosomal protein S15a
- Chain XX
- uS12
- Chain bb
- 40S ribosomal protein S27
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