J3_9YPZ_037
3D structure
- PDB id
- 9YPZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Vacant ribosome with P-site tRNA, substate 1, Structure Ia
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CCGGAC*GGGUG*UUAGAUG
- Length
- 18 nucleotides
- Bulged bases
- 9YPZ|1|9|G|1507, 9YPZ|1|9|U|1509
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9YPZ|1|9|C|1272
9YPZ|1|9|C|1273
9YPZ|1|9|G|1274
9YPZ|1|9|G|1275
9YPZ|1|9|A|1276
9YPZ|1|9|C|1277
*
9YPZ|1|9|G|1320
9YPZ|1|9|G|1321
9YPZ|1|9|G|1322
9YPZ|1|9|U|1323
9YPZ|1|9|G|1324
*
9YPZ|1|9|U|1504
9YPZ|1|9|U|1505
9YPZ|1|9|A|1506
9YPZ|1|9|G|1507
9YPZ|1|9|A|1508
9YPZ|1|9|U|1509
9YPZ|1|9|G|1510
Current chains
- Chain 9
- 18S ribosomal RNA
Nearby chains
- Chain KK
- S10_plectin domain-containing protein
- Chain dd
- eS29
- Chain ff
- Ribosomal protein S27a
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