J3_9YQ0_013

3D structure

PDB id

9YQ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Vacant ribosome with P-site tRNA, substate 2, Structure Ib

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UCGGUC*GGAGU*AA

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YQ0|1|5|U|2440
9YQ0|1|5|C|2441
9YQ0|1|5|G|2442
9YQ0|1|5|G|2443
9YQ0|1|5|U|2444
9YQ0|1|5|C|2445
*
9YQ0|1|5|G|2515
9YQ0|1|5|G|2516
9YQ0|1|5|A|2517
9YQ0|1|5|G|2518
9YQ0|1|5|U|2519
*
9YQ0|1|5|A|2536
9YQ0|1|5|A|2537

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain X

eL23

Chain g

Large ribosomal subunit protein eL34

Chain k

eL38

Chain l

eL39