J3_9YQ1_003
3D structure
- PDB id
- 9YQ1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Vacant ribosome with P-site tRNA, substate 3, Structure Ic
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CGAUAGUCAACAAGUAC*GGAAAG*CUCG
- Length
- 27 nucleotides
- Bulged bases
- 9YQ1|1|5|U|354, 9YQ1|1|5|A|362, 9YQ1|1|8|C|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9YQ1|1|5|C|351
9YQ1|1|5|G|352
9YQ1|1|5|A|353
9YQ1|1|5|U|354
9YQ1|1|5|A|355
9YQ1|1|5|G|356
9YQ1|1|5|U|357
9YQ1|1|5|C|358
9YQ1|1|5|A|359
9YQ1|1|5|A|360
9YQ1|1|5|C|361
9YQ1|1|5|A|362
9YQ1|1|5|A|363
9YQ1|1|5|G|364
9YQ1|1|5|U|365
9YQ1|1|5|A|366
9YQ1|1|5|C|367
*
9YQ1|1|5|G|374
9YQ1|1|5|G|375
9YQ1|1|5|A|376
9YQ1|1|5|A|377
9YQ1|1|5|A|378
9YQ1|1|5|G|379
*
9YQ1|1|8|C|21
9YQ1|1|8|U|22
9YQ1|1|8|C|23
9YQ1|1|8|G|24
Current chains
- Chain 5
- 28S ribosomal RNA
- Chain 8
- 5.8S ribosomal RNA
Nearby chains
- Chain C
- 60S ribosomal protein L4
- Chain Y
- uL24
- Chain j
- Ribosomal protein L37
- Chain l
- eL39
Coloring options: