J3_9YQ1_004

3D structure

PDB id

9YQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Vacant ribosome with P-site tRNA, substate 3, Structure Ic

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUGAAAAG*CG*CA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YQ1|1|5|U|380
9YQ1|1|5|U|381
9YQ1|1|5|G|382
9YQ1|1|5|A|383
9YQ1|1|5|A|384
9YQ1|1|5|A|385
9YQ1|1|5|A|386
9YQ1|1|5|G|387
*
9YQ1|1|5|C|414
9YQ1|1|5|G|415
*
9YQ1|1|8|C|19
9YQ1|1|8|A|20

Current chains

Chain 5

28S ribosomal RNA

Chain 8

5.8S ribosomal RNA

Nearby chains

Chain C

60S ribosomal protein L4

Chain Y

uL24

Chain l

eL39