J3_9YQ1_018

3D structure

PDB id

9YQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Vacant ribosome with P-site tRNA, substate 3, Structure Ic

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGG*CUGAC*GGACAG

Length

14 nucleotides

Bulged bases

9YQ1|1|5|G|4076

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YQ1|1|5|C|3937
9YQ1|1|5|G|3938
9YQ1|1|5|G|3939
*
9YQ1|1|5|C|4074
9YQ1|1|5|U|4075
9YQ1|1|5|G|4076
9YQ1|1|5|A|4077
9YQ1|1|5|C|4078
*
9YQ1|1|5|G|4168
9YQ1|1|5|G|4169
9YQ1|1|5|A|4170
9YQ1|1|5|C|4171
9YQ1|1|5|A|4172
9YQ1|1|5|G|4173

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain A

Ribosomal protein L8

Chain G

60S ribosomal protein L7a

Chain N

Ribosomal protein L15