J3_9YQ1_033

3D structure

PDB id

9YQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Vacant ribosome with P-site tRNA, substate 3, Structure Ic

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCG*UUCCG*CAAAG

Length

13 nucleotides

Bulged bases

9YQ1|1|9|C|1138, 9YQ1|1|9|A|1150

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YQ1|1|9|C|1094
9YQ1|1|9|C|1095
9YQ1|1|9|G|1096
*
9YQ1|1|9|U|1136
9YQ1|1|9|U|1137
9YQ1|1|9|C|1138
9YQ1|1|9|C|1139
9YQ1|1|9|G|1140
*
9YQ1|1|9|C|1147
9YQ1|1|9|A|1148
9YQ1|1|9|A|1149
9YQ1|1|9|A|1150
9YQ1|1|9|G|1151

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain AA

uS2 (SA)

Chain VV

eS21

Chain WW

Ribosomal protein S15a

Chain aa

40S ribosomal protein S26

Chain bb

40S ribosomal protein S27