J3_9YQ1_036

3D structure

PDB id

9YQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Vacant ribosome with P-site tRNA, substate 3, Structure Ic

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUUAAUUU*GGGAAACCUCAC*GGCUG

Length

25 nucleotides

Bulged bases

9YQ1|1|9|G|1256, 9YQ1|1|9|A|1258, 9YQ1|1|9|A|1260

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YQ1|1|9|C|1237
9YQ1|1|9|U|1238
9YQ1|1|9|U|1239
9YQ1|1|9|A|1240
9YQ1|1|9|A|1241
9YQ1|1|9|U|1242
9YQ1|1|9|U|1243
9YQ1|1|9|U|1244
*
9YQ1|1|9|G|1255
9YQ1|1|9|G|1256
9YQ1|1|9|G|1257
9YQ1|1|9|A|1258
9YQ1|1|9|A|1259
9YQ1|1|9|A|1260
9YQ1|1|9|C|1261
9YQ1|1|9|C|1262
9YQ1|1|9|U|1263
9YQ1|1|9|C|1264
9YQ1|1|9|A|1265
9YQ1|1|9|C|1266
*
9YQ1|1|9|G|1516
9YQ1|1|9|G|1517
9YQ1|1|9|C|1518
9YQ1|1|9|U|1519
9YQ1|1|9|G|1520

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain PP

uS19

Chain SS

uS13

Chain UU

uS10

Chain dd

eS29