J3_9YQ1_037

3D structure

PDB id

9YQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Vacant ribosome with P-site tRNA, substate 3, Structure Ic

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCGGAC*GGGUG*UUAGAUG

Length

18 nucleotides

Bulged bases

9YQ1|1|9|G|1507, 9YQ1|1|9|U|1509

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YQ1|1|9|C|1272
9YQ1|1|9|C|1273
9YQ1|1|9|G|1274
9YQ1|1|9|G|1275
9YQ1|1|9|A|1276
9YQ1|1|9|C|1277
*
9YQ1|1|9|G|1320
9YQ1|1|9|G|1321
9YQ1|1|9|G|1322
9YQ1|1|9|U|1323
9YQ1|1|9|G|1324
*
9YQ1|1|9|U|1504
9YQ1|1|9|U|1505
9YQ1|1|9|A|1506
9YQ1|1|9|G|1507
9YQ1|1|9|A|1508
9YQ1|1|9|U|1509
9YQ1|1|9|G|1510

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain KK

S10_plectin domain-containing protein

Chain dd

eS29

Chain ff

Ribosomal protein S27a