J3_9ZFD_003

3D structure

PDB id

9ZFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of RNase P RNA from Geobacillus stearothermophilus, conformer 3

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

GCG*CUGAAAG*CC

Length

12 nucleotides

Bulged bases

9ZFD|1|A|C|141

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9ZFD_003 not in the Motif Atlas

Homologous match to J3_1NBS_002

Geometric discrepancy: 0.3474

The information below is about J3_1NBS_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_70464.1

Basepair signature

cWW-cWW-cWW-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

9ZFD|1|A|G|140
9ZFD|1|A|C|141
9ZFD|1|A|G|142
*
9ZFD|1|A|C|184
9ZFD|1|A|U|185
9ZFD|1|A|G|186
9ZFD|1|A|A|187
9ZFD|1|A|A|188
9ZFD|1|A|A|189
9ZFD|1|A|G|190
*
9ZFD|1|A|C|242
9ZFD|1|A|C|243

Current chains

Chain A

RNase P RNA

Nearby chains