J3_9ZI4_001

3D structure

PDB id

9ZI4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of RNase P RNA from Geobacillus stearothermophilus, conformer 53

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGG*CG*UACAGAACAUGGCUUAUAG

Length

24 nucleotides

Bulged bases

9ZI4|1|A|A|389, 9ZI4|1|A|A|390

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9ZI4_001 not in the Motif Atlas

Geometric match to J3_2A64_003

Geometric discrepancy: 0.1765

The information below is about J3_2A64_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_82932.1

Basepair signature

cWW-F-F-cWW-cSS-cSS-cWW-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

1

Unit IDs

9ZI4|1|A|C|13
9ZI4|1|A|G|14
9ZI4|1|A|G|15
*
9ZI4|1|A|C|344
9ZI4|1|A|G|345
*
9ZI4|1|A|U|384
9ZI4|1|A|A|385
9ZI4|1|A|C|386
9ZI4|1|A|A|387
9ZI4|1|A|G|388
9ZI4|1|A|A|389
9ZI4|1|A|A|390
9ZI4|1|A|C|391
9ZI4|1|A|A|392
9ZI4|1|A|U|393
9ZI4|1|A|G|394
9ZI4|1|A|G|395
9ZI4|1|A|C|396
9ZI4|1|A|U|397
9ZI4|1|A|U|398
9ZI4|1|A|A|399
9ZI4|1|A|U|400
9ZI4|1|A|A|401
9ZI4|1|A|G|402

Current chains

Chain A

RNase P RNA

Nearby chains