J3_9ZI4_003

3D structure

PDB id

9ZI4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of RNase P RNA from Geobacillus stearothermophilus, conformer 53

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GCG*CUGAAAG*CC

Length

12 nucleotides

Bulged bases

9ZI4|1|A|C|141

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9ZI4_003 not in the Motif Atlas

Homologous match to J3_1NBS_002

Geometric discrepancy: 0.1743

The information below is about J3_1NBS_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_70464.1

Basepair signature

cWW-cWW-cWW-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

9ZI4|1|A|G|140
9ZI4|1|A|C|141
9ZI4|1|A|G|142
*
9ZI4|1|A|C|184
9ZI4|1|A|U|185
9ZI4|1|A|G|186
9ZI4|1|A|A|187
9ZI4|1|A|A|188
9ZI4|1|A|A|189
9ZI4|1|A|G|190
*
9ZI4|1|A|C|242
9ZI4|1|A|C|243

Current chains

Chain A

RNase P RNA

Nearby chains