J3_9ZIB_003

3D structure

PDB id

9ZIB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Geobacillus stearothermophilus RNase P holoenzyme in 1 mM Mg2+, conformer 3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCG*CUGAAAG*CC

Length

12 nucleotides

Bulged bases

9ZIB|1|A|C|141

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9ZIB_003 not in the Motif Atlas

Homologous match to J3_1NBS_002

Geometric discrepancy: 0.3225

The information below is about J3_1NBS_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_70464.1

Basepair signature

cWW-cWW-cWW-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

9ZIB|1|A|G|140
9ZIB|1|A|C|141
9ZIB|1|A|G|142
*
9ZIB|1|A|C|184
9ZIB|1|A|U|185
9ZIB|1|A|G|186
9ZIB|1|A|A|187
9ZIB|1|A|A|188
9ZIB|1|A|A|189
9ZIB|1|A|G|190
*
9ZIB|1|A|C|242
9ZIB|1|A|C|243

Current chains

Chain A

RNase P RNA (417-MER)

Nearby chains