J3_9ZIH_003

3D structure

PDB id

9ZIH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Geobacillus stearothermophilus RNase P holoenzyme in 1 mM Mg2+, conformer 9

Experimental method

ELECTRON MICROSCOPY

Resolution

3.07 Å

Loop

Sequence

GCG*CUGAAAG*CC

Length

12 nucleotides

Bulged bases

9ZIH|1|A|C|141

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9ZIH_003 not in the Motif Atlas

Homologous match to J3_1NBS_002

Geometric discrepancy: 0.3936

The information below is about J3_1NBS_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_70464.1

Basepair signature

cWW-cWW-cWW-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

9ZIH|1|A|G|140
9ZIH|1|A|C|141
9ZIH|1|A|G|142
*
9ZIH|1|A|C|184
9ZIH|1|A|U|185
9ZIH|1|A|G|186
9ZIH|1|A|A|187
9ZIH|1|A|A|188
9ZIH|1|A|A|189
9ZIH|1|A|G|190
*
9ZIH|1|A|C|242
9ZIH|1|A|C|243

Current chains

Chain A

RNase P RNA (417-MER)

Nearby chains