J3_9ZIK_003

3D structure

PDB id

9ZIK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Geobacillus stearothermophilus RNase P holoenzyme in 1 mM Mg2+, conformer 12

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

GCG*CUGAAAG*CC

Length

12 nucleotides

Bulged bases

9ZIK|1|A|C|141

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9ZIK_003 not in the Motif Atlas

Homologous match to J3_1NBS_002

Geometric discrepancy: 0.192

The information below is about J3_1NBS_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_70464.1

Basepair signature

cWW-cWW-cWW-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

9ZIK|1|A|G|140
9ZIK|1|A|C|141
9ZIK|1|A|G|142
*
9ZIK|1|A|C|184
9ZIK|1|A|U|185
9ZIK|1|A|G|186
9ZIK|1|A|A|187
9ZIK|1|A|A|188
9ZIK|1|A|A|189
9ZIK|1|A|G|190
*
9ZIK|1|A|C|242
9ZIK|1|A|C|243

Current chains

Chain A

RNase P RNA (417-MER)

Nearby chains