J3_9ZIL_003

3D structure

PDB id

9ZIL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Geobacillus stearothermophilus RNase P holoenzyme in 1 mM Mg2+, conformer 13

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCG*CUGAAAG*CC

Length

12 nucleotides

Bulged bases

9ZIL|1|A|C|141

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9ZIL_003 not in the Motif Atlas

Homologous match to J3_1NBS_002

Geometric discrepancy: 0.3457

The information below is about J3_1NBS_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_70464.1

Basepair signature

cWW-cWW-cWW-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

9ZIL|1|A|G|140
9ZIL|1|A|C|141
9ZIL|1|A|G|142
*
9ZIL|1|A|C|184
9ZIL|1|A|U|185
9ZIL|1|A|G|186
9ZIL|1|A|A|187
9ZIL|1|A|A|188
9ZIL|1|A|A|189
9ZIL|1|A|G|190
*
9ZIL|1|A|C|242
9ZIL|1|A|C|243

Current chains

Chain A

RNase P RNA (417-MER)

Nearby chains