J3_9ZIM_003

3D structure

PDB id

9ZIM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Geobacillus stearothermophilus RNase P holoenzyme in 1 mM Mg2+, conformer 14

Experimental method

ELECTRON MICROSCOPY

Resolution

3.21 Å

Loop

Sequence

GCG*CUGAAAG*CC

Length

12 nucleotides

Bulged bases

9ZIM|1|A|C|141, 9ZIM|1|A|A|187

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9ZIM_003 not in the Motif Atlas

Homologous match to J3_1NBS_002

Geometric discrepancy: 0.2687

The information below is about J3_1NBS_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_70464.1

Basepair signature

cWW-cWW-cWW-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

9ZIM|1|A|G|140
9ZIM|1|A|C|141
9ZIM|1|A|G|142
*
9ZIM|1|A|C|184
9ZIM|1|A|U|185
9ZIM|1|A|G|186
9ZIM|1|A|A|187
9ZIM|1|A|A|188
9ZIM|1|A|A|189
9ZIM|1|A|G|190
*
9ZIM|1|A|C|242
9ZIM|1|A|C|243

Current chains

Chain A

RNase P RNA (417-MER)

Nearby chains