J4_10CH_002

3D structure

PDB id

10CH (explore in PDB, NAKB, or RNA 3D Hub)

Description

[011SE] Two turn tensegrity triangle with 0,1 and 1 bp sticky ends

Experimental method

X-RAY DIFFRACTION

Resolution

4.45 Å

Loop

Sequence

GA*TG*CT*AC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

10CH|1|A|DG|115
10CH|1|A|DA|116
*
10CH|1|D|DT|108
10CH|1|D|DG|109
*
10CH|1|B|DC|108
10CH|1|B|DT|109
*
10CH|1|M|DA|103
10CH|1|M|DC|104

Current chains

Chain A

DNA (5'-D(*CP*GP*AP*TP*GP*CP*CP*TP*GP*AP*TP*CP*GP*GP*AP*CP*AP*TP*AP*AP*A)-3')

Chain B

DNA (5'-D(*GP*AP*GP*CP*GP*AP*CP*CP*TP*GP*TP*AP*CP*GP*GP*AP*CP*AP*TP*CP*A)-3')

Chain D

DNA (5'-D(*TP*TP*TP*AP*TP*GP*TP*GP*GP*TP*CP*GP*CP*T)-3')

Chain M

DNA (5'-D(*AP*CP*AP*CP*CP*GP*AP*TP*CP*AP*CP*CP*TP*GP*CP*CP*AP*CP*CP*GP*T)-3')

Nearby chains