J4_10PX_024

3D structure

PDB id

10PX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with benzoxaborole derivative of azithromycin (AZI-BB2), mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.45A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.45 Å

Loop

Sequence

UUG*CG*CCUAAGGUAG*CGAAAA

Length

21 nucleotides

Bulged bases

10PX|1|2A|A|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

10PX|1|2A|U|1833
10PX|1|2A|U|1834
10PX|1|2A|G|1835
*
10PX|1|2A|C|1905
10PX|1|2A|G|1906
*
10PX|1|2A|C|1924
10PX|1|2A|C|1925
10PX|1|2A|U|1926
10PX|1|2A|A|1927
10PX|1|2A|A|1928
10PX|1|2A|G|1929
10PX|1|2A|G|1930
10PX|1|2A|U|1931
10PX|1|2A|A|1932
10PX|1|2A|G|1933
*
10PX|1|2A|C|1967
10PX|1|2A|G|1968
10PX|1|2A|A|1969
10PX|1|2A|A|1970
10PX|1|2A|A|1971
10PX|1|2A|A|1972

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2D

50S ribosomal protein L2

Chain 2a

Small subunit ribosomal RNA; SSU rRNA

Chain 2x

Transfer RNA; tRNA