J4_10PX_032
3D structure
- PDB id
- 10PX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with benzoxaborole derivative of azithromycin (AZI-BB2), mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.45A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.45 Å
Loop
- Sequence
- A(4SU)AG*CAG*CGU(G7M)UCCU*AGU
- Length
- 18 nucleotides
- Bulged bases
- 10PX|1|2y|U|47, 10PX|1|2y|C|48
- QA status
- Modified nucleotides: 4SU, G7M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
10PX|1|2y|A|7
10PX|1|2y|4SU|8
10PX|1|2y|A|9
10PX|1|2y|G|10
*
10PX|1|2y|C|25
10PX|1|2y|A|26
10PX|1|2y|G|27
*
10PX|1|2y|C|43
10PX|1|2y|G|44
10PX|1|2y|U|45
10PX|1|2y|G7M|46
10PX|1|2y|U|47
10PX|1|2y|C|48
10PX|1|2y|C|49
10PX|1|2y|U|50
*
10PX|1|2y|A|64
10PX|1|2y|G|65
10PX|1|2y|U|66
Current chains
- Chain 2y
- E-site Deacylated tRNAphe
Nearby chains
- Chain 26
- 50S ribosomal protein L33
- Chain 2g
- 30S ribosomal protein S7
- Chain 2k
- 30S ribosomal protein S11
Coloring options: