J4_11DG_001

3D structure

PDB id

11DG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved Vibrio cholerae 16S rRNA (VC-S4.4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAGUAAUGC*GUG*CUAG*CC

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

11DG|1|A|G|115
11DG|1|A|A|116
11DG|1|A|G|117
11DG|1|A|U|118
11DG|1|A|A|119
11DG|1|A|A|120
11DG|1|A|U|121
11DG|1|A|G|122
11DG|1|A|C|123
*
11DG|1|A|G|238
11DG|1|A|U|239
11DG|1|A|G|240
*
11DG|1|A|C|286
11DG|1|A|U|287
11DG|1|A|A|288
11DG|1|A|G|289
*
11DG|1|A|C|311
11DG|1|A|C|312

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain P

Small ribosomal subunit protein bS16

Chain Q

Small ribosomal subunit protein uS17