J4_11DG_004

3D structure

PDB id

11DG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved Vibrio cholerae 16S rRNA (VC-S4.4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCAG*CGAUGAGUAG*UGAAUAUG*CAAG

Length

26 nucleotides

Bulged bases

11DG|1|a|U|369, 11DG|1|a|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

11DG|1|a|C|268
11DG|1|a|C|269
11DG|1|a|A|270
11DG|1|a|G|271
*
11DG|1|a|C|366
11DG|1|a|G|367
11DG|1|a|A|368
11DG|1|a|U|369
11DG|1|a|G|370
11DG|1|a|A|371
11DG|1|a|G|372
11DG|1|a|U|373
11DG|1|a|A|374
11DG|1|a|G|375
*
11DG|1|a|U|399
11DG|1|a|G|400
11DG|1|a|A|401
11DG|1|a|A|402
11DG|1|a|U|403
11DG|1|a|A|404
11DG|1|a|U|405
11DG|1|a|G|406
*
11DG|1|a|C|421
11DG|1|a|A|422
11DG|1|a|A|423
11DG|1|a|G|424

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain h

Large ribosomal subunit protein bL9

Chain w

50S ribosomal protein L28