J4_11DG_008

3D structure

PDB id

11DG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved Vibrio cholerae 16S rRNA (VC-S4.4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

11DG|1|a|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

11DG|1|a|G|1310
11DG|1|a|G|1311
11DG|1|a|U|1312
11DG|1|a|U|1313
11DG|1|a|C|1314
*
11DG|1|a|G|1338
11DG|1|a|G|1339
11DG|1|a|U|1340
11DG|1|a|G|1341
11DG|1|a|A|1342
11DG|1|a|G|1343
*
11DG|1|a|C|1404
11DG|1|a|U|1405
*
11DG|1|a|A|1597
11DG|1|a|A|1598
11DG|1|a|U|1599
11DG|1|a|C|1600
11DG|1|a|G|1601
11DG|1|a|U|1602
11DG|1|a|A|1603
11DG|1|a|C|1604

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 1

Large ribosomal subunit protein bL34

Chain s

50S ribosomal protein L23