J4_11DG_012

3D structure

PDB id

11DG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved Vibrio cholerae 16S rRNA (VC-S4.4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CU(2MG)*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

11DG|1|a|U|1971

QA status

Modified nucleotides: 2MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

11DG|1|a|C|1833
11DG|1|a|U|1834
11DG|1|a|2MG|1835
*
11DG|1|a|C|1905
11DG|1|a|G|1906
*
11DG|1|a|C|1924
11DG|1|a|C|1925
11DG|1|a|U|1926
11DG|1|a|A|1927
11DG|1|a|A|1928
11DG|1|a|G|1929
11DG|1|a|G|1930
11DG|1|a|U|1931
11DG|1|a|A|1932
11DG|1|a|G|1933
*
11DG|1|a|C|1967
11DG|1|a|G|1968
11DG|1|a|A|1969
11DG|1|a|A|1970
11DG|1|a|U|1971
11DG|1|a|G|1972

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain c

50S ribosomal protein L2