J4_11HE_009

3D structure

PDB id

11HE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 60S ribosomal subunit with eEF2 domain IV closed

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

CUAAG*UUGAU*ACC*GGG

Length

16 nucleotides

Bulged bases

11HE|1|28|A|4234

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_11HE_009 not in the Motif Atlas

Homologous match to J4_9H3G_010

Geometric discrepancy: 0.154

The information below is about J4_9H3G_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_59590.3

Basepair signature

cWW-F-F-tWW-tHH-cWW-cWW-F-cWW-F

Number of instances in this motif group

4

Unit IDs

11HE|1|28|C|4231
11HE|1|28|U|4232
11HE|1|28|A|4233
11HE|1|28|A|4234
11HE|1|28|G|4235
*
11HE|1|28|U|4289
11HE|1|28|U|4290
11HE|1|28|G|4291
11HE|1|28|A|4292
11HE|1|28|U|4293
*
11HE|1|28|A|4317
11HE|1|28|C|4318
11HE|1|28|C|4319
*
11HE|1|28|G|4328
11HE|1|28|G|4329
11HE|1|28|G|4330

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 21

60S ribosomal protein L21

Chain 29

Large ribosomal subunit protein eL29

Chain 42

eL42

Chain L5

60S ribosomal protein L5