Loop J4_11HG

3D structure

PDB id: 11HG (explore in PDB, NAKB, or RNA 3D Hub)
Description: Rabbit 80S with eEF2,CCDC124,and LARP1,40S-head-swiveled
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å

Loop

Sequence: CUUGUCUCAAA*UGACGAAAAAUAAC*GGAAUGAGUCCACUUUAAAUCCUUUAACGAGGAUCCAU*AUAG
Length: 67 nucleotides
Bulged bases: None detected
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

11HG|1|18|C|30
11HG|1|18|U|31
11HG|1|18|U|32
11HG|1|18|G|33
11HG|1|18|U|34
11HG|1|18|C|35
11HG|1|18|U|36
11HG|1|18|C|37
11HG|1|18|A|38
11HG|1|18|A|39
11HG|1|18|A|40
*
11HG|1|18|U|514
11HG|1|18|G|515
11HG|1|18|A|516
11HG|1|18|C|517
11HG|1|18|G|518
11HG|1|18|A|519
11HG|1|18|A|520
11HG|1|18|A|521
11HG|1|18|A|522
11HG|1|18|A|523
11HG|1|18|U|524
11HG|1|18|A|525
11HG|1|18|A|526
11HG|1|18|C|527
*
11HG|1|18|G|558
11HG|1|18|G|559
11HG|1|18|A|560
11HG|1|18|A|561
11HG|1|18|U|562
11HG|1|18|G|563
11HG|1|18|A|564
11HG|1|18|G|565
11HG|1|18|U|566
11HG|1|18|C|567
11HG|1|18|C|568
11HG|1|18|A|569
11HG|1|18|C|570
11HG|1|18|U|571
11HG|1|18|U|572
11HG|1|18|U|573
11HG|1|18|A|574
11HG|1|18|A|575
11HG|1|18|A|576
11HG|1|18|U|577
11HG|1|18|C|578
11HG|1|18|C|579
11HG|1|18|U|580
11HG|1|18|U|581
11HG|1|18|U|582
11HG|1|18|A|583
11HG|1|18|A|584
11HG|1|18|C|585
11HG|1|18|G|586
11HG|1|18|A|587
11HG|1|18|G|588
11HG|1|18|G|589
11HG|1|18|A|590
11HG|1|18|U|591
11HG|1|18|C|592
11HG|1|18|C|593
11HG|1|18|A|594
11HG|1|18|U|595
*
11HG|1|18|A|641
11HG|1|18|U|642
11HG|1|18|A|643
11HG|1|18|G|644

Current chains

Chain 18: 18S rRNA

Nearby chains

Chain RR: uS12
Chain S4: 40S ribosomal protein S4
Chain S9: 40S ribosomal protein S9
Chain SS: 40S ribosomal protein S24
Chain YY: 40S ribosomal protein S30

J4_11HG_001