J4_11HG_009
3D structure
- PDB id
- 11HG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S with eEF2,CCDC124,and LARP1,40S-head-swiveled
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GG*UGUGAA*UGGAAAG*UC
- Length
- 17 nucleotides
- Bulged bases
- 11HG|1|28|A|2696
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_11HG_009 not in the Motif Atlas
- Homologous match to J4_8GLP_008
- Geometric discrepancy: 0.255
- The information below is about J4_8GLP_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
11HG|1|28|G|2618
11HG|1|28|G|2619
*
11HG|1|28|U|2637
11HG|1|28|G|2638
11HG|1|28|U|2639
11HG|1|28|G|2640
11HG|1|28|A|2641
11HG|1|28|A|2642
*
11HG|1|28|U|2692
11HG|1|28|G|2693
11HG|1|28|G|2694
11HG|1|28|A|2695
11HG|1|28|A|2696
11HG|1|28|A|2697
11HG|1|28|G|2698
*
11HG|1|28|U|2718
11HG|1|28|C|2719
Current chains
- Chain 28
- 28s rRNA
Nearby chains
- Chain 19
- 60S ribosomal protein L19
- Chain 22
- Large ribosomal subunit protein eL22
- Chain 34
- 60S ribosomal protein L34
- Chain 38
- Large ribosomal subunit protein eL38
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