J4_11KH_004

3D structure

PDB id

11KH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with IFRD2 and LARP1, 40S head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAAG*CCCAGCCC*GAC*GGUAG

Length

20 nucleotides

Bulged bases

11KH|1|28|C|216, 11KH|1|28|C|217, 11KH|1|28|A|218, 11KH|1|28|G|219

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

11KH|1|28|C|196
11KH|1|28|A|197
11KH|1|28|A|198
11KH|1|28|G|199
*
11KH|1|28|C|215
11KH|1|28|C|216
11KH|1|28|C|217
11KH|1|28|A|218
11KH|1|28|G|219
11KH|1|28|C|220
11KH|1|28|C|221
11KH|1|28|C|222
*
11KH|1|28|G|226
11KH|1|28|A|227
11KH|1|28|C|228
*
11KH|1|28|G|240
11KH|1|28|G|241
11KH|1|28|U|242
11KH|1|28|A|243
11KH|1|28|G|244

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 26

60S ribosomal protein L26

Chain L4

60S ribosomal protein L4