J4_11KH_005
3D structure
- PDB id
- 11KH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S with IFRD2 and LARP1, 40S head-swiveled
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CC*GAGGGAG*UGCGCCGCG*CACGGGG
- Length
- 25 nucleotides
- Bulged bases
- 11KH|1|28|G|959, 11KH|1|28|C|972, 11KH|1|28|C|1280
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
11KH|1|28|C|712
11KH|1|28|C|713
*
11KH|1|28|G|955
11KH|1|28|A|956
11KH|1|28|G|957
11KH|1|28|G|958
11KH|1|28|G|959
11KH|1|28|A|960
11KH|1|28|G|961
*
11KH|1|28|U|971
11KH|1|28|G|971|||A
11KH|1|28|C|972
11KH|1|28|G|973
11KH|1|28|C|974
11KH|1|28|C|975
11KH|1|28|G|976
11KH|1|28|C|977
11KH|1|28|G|978
*
11KH|1|28|C|1278
11KH|1|28|A|1279
11KH|1|28|C|1280
11KH|1|28|G|1281
11KH|1|28|G|1282
11KH|1|28|G|1283
11KH|1|28|G|1284
Current chains
- Chain 28
- 28S rRNA
Nearby chains
- Chain 32
- Large ribosomal subunit protein eL32
- Chain L4
- 60S ribosomal protein L4
- Chain L6
- large ribosomal subunit protein eL6
- Chain L7
- 60S ribosomal protein L7
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