J4_11KH_008

3D structure

PDB id

11KH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with IFRD2 and LARP1, 40S head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GG*UGUGAA*UGGAAAG*UC

Length

17 nucleotides

Bulged bases

11KH|1|28|A|2696

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_11KH_008 not in the Motif Atlas

Homologous match to J4_8GLP_008

Geometric discrepancy: 0.1652

The information below is about J4_8GLP_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

11KH|1|28|G|2618
11KH|1|28|G|2619
*
11KH|1|28|U|2637
11KH|1|28|G|2638
11KH|1|28|U|2639
11KH|1|28|G|2640
11KH|1|28|A|2641
11KH|1|28|A|2642
*
11KH|1|28|U|2692
11KH|1|28|G|2693
11KH|1|28|G|2694
11KH|1|28|A|2695
11KH|1|28|A|2696
11KH|1|28|A|2697
11KH|1|28|G|2698
*
11KH|1|28|U|2718
11KH|1|28|C|2719

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 19

60S ribosomal protein L19

Chain 22

Large ribosomal subunit protein eL22

Chain 34

60S ribosomal protein L34

Chain 38

Large ribosomal subunit protein eL38