J4_11KH_010

3D structure

PDB id

11KH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with IFRD2 and LARP1, 40S head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

11KH|1|28|U|3818

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_11KH_010 not in the Motif Atlas

Homologous match to J4_8GLP_010

Geometric discrepancy: 0.1082

The information below is about J4_8GLP_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_21738.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tSW-F-cSH-F-F

Number of instances in this motif group

2

Unit IDs

11KH|1|28|C|3696
11KH|1|28|U|3697
11KH|1|28|G|3698
*
11KH|1|28|C|3752
11KH|1|28|G|3753
*
11KH|1|28|C|3771
11KH|1|28|U|3772
11KH|1|28|U|3773
11KH|1|28|A|3774
11KH|1|28|A|3775
11KH|1|28|G|3776
11KH|1|28|G|3777
11KH|1|28|U|3778
11KH|1|28|A|3779
11KH|1|28|G|3780
*
11KH|1|28|U|3814
11KH|1|28|G|3815
11KH|1|28|A|3816
11KH|1|28|A|3817
11KH|1|28|U|3818
11KH|1|28|G|3819

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 18

Small subunit ribosomal RNA; SSU rRNA

Chain 41

eL41

Chain IF

IFRD2

Chain L8

60S ribosomal protein L8