J4_12DP_012

3D structure

PDB id

12DP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with sparsomycin, mRNA, and aminoacylated initiator P-site fMet-tRNAmet at 2.95A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

12DP|1|1a|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

12DP|1|1a|G|142
12DP|1|1a|A|143
12DP|1|1a|G|144
*
12DP|1|1a|C|178
12DP|1|1a|A|179
12DP|1|1a|U|180
12DP|1|1a|G|181
12DP|1|1a|U|182
12DP|1|1a|G|183
*
12DP|1|1a|C|194
12DP|1|1a|A|195
12DP|1|1a|A|196
12DP|1|1a|A|197
12DP|1|1a|G|198
*
12DP|1|1a|C|219
12DP|1|1a|G|220
12DP|1|1a|C|221

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1t

30S ribosomal protein S20