J4_12DP_016

3D structure

PDB id

12DP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with sparsomycin, mRNA, and aminoacylated initiator P-site fMet-tRNAmet at 2.95A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CGAAG*CGCC*GAG*CGUAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_12DP_016 not in the Motif Atlas

Homologous match to J4_8B0X_005

Geometric discrepancy: 0.1025

The information below is about J4_8B0X_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_16174.1

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

5

Unit IDs

12DP|1|2A|C|297
12DP|1|2A|G|298
12DP|1|2A|A|299
12DP|1|2A|A|300
12DP|1|2A|G|301
*
12DP|1|2A|C|316
12DP|1|2A|G|317
12DP|1|2A|C|318
12DP|1|2A|C|319
*
12DP|1|2A|G|323
12DP|1|2A|A|324
12DP|1|2A|G|325
*
12DP|1|2A|C|337
12DP|1|2A|G|338
12DP|1|2A|U|339
12DP|1|2A|A|340
12DP|1|2A|G|341

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2F

50S ribosomal protein L4

Chain 2Y

50S ribosomal protein L24