J4_12DP_022

3D structure

PDB id

12DP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with sparsomycin, mRNA, and aminoacylated initiator P-site fMet-tRNAmet at 2.95A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

UUG*CG*CCUAAGGUAG*CGAAAA

Length

21 nucleotides

Bulged bases

12DP|1|2A|A|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_12DP_022 not in the Motif Atlas

Homologous match to J4_8B0X_012

Geometric discrepancy: 0.1055

The information below is about J4_8B0X_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.3

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

12DP|1|2A|U|1833
12DP|1|2A|U|1834
12DP|1|2A|G|1835
*
12DP|1|2A|C|1905
12DP|1|2A|G|1906
*
12DP|1|2A|C|1924
12DP|1|2A|C|1925
12DP|1|2A|U|1926
12DP|1|2A|A|1927
12DP|1|2A|A|1928
12DP|1|2A|G|1929
12DP|1|2A|G|1930
12DP|1|2A|U|1931
12DP|1|2A|A|1932
12DP|1|2A|G|1933
*
12DP|1|2A|C|1967
12DP|1|2A|G|1968
12DP|1|2A|A|1969
12DP|1|2A|A|1970
12DP|1|2A|A|1971
12DP|1|2A|A|1972

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2D

50S ribosomal protein L2

Chain 2a

Small subunit ribosomal RNA; SSU rRNA

Chain 2x

Transfer RNA; tRNA