J4_12DP_025
3D structure
- PDB id
- 12DP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with sparsomycin, mRNA, and aminoacylated initiator P-site fMet-tRNAmet at 2.95A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.95 Å
Loop
- Sequence
- GAGUAACG*UC*GUAG*CC
- Length
- 16 nucleotides
- Bulged bases
- 12DP|1|2a|C|121
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
12DP|1|2a|G|115
12DP|1|2a|A|116
12DP|1|2a|G|117
12DP|1|2a|U|118
12DP|1|2a|A|119
12DP|1|2a|A|120
12DP|1|2a|C|121
12DP|1|2a|G|122
*
12DP|1|2a|U|239
12DP|1|2a|C|240
*
12DP|1|2a|G|286
12DP|1|2a|U|287
12DP|1|2a|A|288
12DP|1|2a|G|289
*
12DP|1|2a|C|311
12DP|1|2a|C|312
Current chains
- Chain 2a
- 16S Ribosomal RNA
Nearby chains
- Chain 2p
- 30S ribosomal protein S16
- Chain 2q
- 30S ribosomal protein S17
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