J4_12DQ_002

3D structure

PDB id

12DQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Thermus thermophilus 70S ribosome in complex with sparsomycin, protein Y, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.75A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

CGAAG*CGCC*GAG*CGUAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_12DQ_002 not in the Motif Atlas

Homologous match to J4_8B0X_005

Geometric discrepancy: 0.0789

The information below is about J4_8B0X_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_16174.1

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

5

Unit IDs

12DQ|1|1A|C|297
12DQ|1|1A|G|298
12DQ|1|1A|A|299
12DQ|1|1A|A|300
12DQ|1|1A|G|301
*
12DQ|1|1A|C|316
12DQ|1|1A|G|317
12DQ|1|1A|C|318
12DQ|1|1A|C|319
*
12DQ|1|1A|G|323
12DQ|1|1A|A|324
12DQ|1|1A|G|325
*
12DQ|1|1A|C|337
12DQ|1|1A|G|338
12DQ|1|1A|U|339
12DQ|1|1A|A|340
12DQ|1|1A|G|341

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1F

50S ribosomal protein L4

Chain 1Y

50S ribosomal protein L24