J4_12DQ_008
3D structure
- PDB id
- 12DQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Thermus thermophilus 70S ribosome in complex with sparsomycin, protein Y, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.75A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.75 Å
Loop
- Sequence
- UUG*CG*CCUAAGGUAG*CGAAAA
- Length
- 21 nucleotides
- Bulged bases
- 12DQ|1|1A|A|1971
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_12DQ_008 not in the Motif Atlas
- Homologous match to J4_8B0X_012
- Geometric discrepancy: 0.0934
- The information below is about J4_8B0X_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_42306.3
- Basepair signature
- cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
- Number of instances in this motif group
- 5
Unit IDs
12DQ|1|1A|U|1833
12DQ|1|1A|U|1834
12DQ|1|1A|G|1835
*
12DQ|1|1A|C|1905
12DQ|1|1A|G|1906
*
12DQ|1|1A|C|1924
12DQ|1|1A|C|1925
12DQ|1|1A|U|1926
12DQ|1|1A|A|1927
12DQ|1|1A|A|1928
12DQ|1|1A|G|1929
12DQ|1|1A|G|1930
12DQ|1|1A|U|1931
12DQ|1|1A|A|1932
12DQ|1|1A|G|1933
*
12DQ|1|1A|C|1967
12DQ|1|1A|G|1968
12DQ|1|1A|A|1969
12DQ|1|1A|A|1970
12DQ|1|1A|A|1971
12DQ|1|1A|A|1972
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 1D
- 50S ribosomal protein L2
- Chain 1a
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: