J4_12DQ_011

3D structure

PDB id

12DQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Thermus thermophilus 70S ribosome in complex with sparsomycin, protein Y, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.75A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

GAGUAACG*UC*GUAG*CC

Length

16 nucleotides

Bulged bases

12DQ|1|1a|C|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

12DQ|1|1a|G|115
12DQ|1|1a|A|116
12DQ|1|1a|G|117
12DQ|1|1a|U|118
12DQ|1|1a|A|119
12DQ|1|1a|A|120
12DQ|1|1a|C|121
12DQ|1|1a|G|122
*
12DQ|1|1a|U|239
12DQ|1|1a|C|240
*
12DQ|1|1a|G|286
12DQ|1|1a|U|287
12DQ|1|1a|A|288
12DQ|1|1a|G|289
*
12DQ|1|1a|C|311
12DQ|1|1a|C|312

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1p

30S ribosomal protein S16

Chain 1q

30S ribosomal protein S17