J4_12DQ_012

3D structure

PDB id

12DQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Thermus thermophilus 70S ribosome in complex with sparsomycin, protein Y, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.75A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

12DQ|1|1a|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

12DQ|1|1a|G|142
12DQ|1|1a|A|143
12DQ|1|1a|G|144
*
12DQ|1|1a|C|178
12DQ|1|1a|A|179
12DQ|1|1a|U|180
12DQ|1|1a|G|181
12DQ|1|1a|U|182
12DQ|1|1a|G|183
*
12DQ|1|1a|C|194
12DQ|1|1a|A|195
12DQ|1|1a|A|196
12DQ|1|1a|A|197
12DQ|1|1a|G|198
*
12DQ|1|1a|C|219
12DQ|1|1a|G|220
12DQ|1|1a|C|221

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1t

30S ribosomal protein S20