J4_1C0A_001

3D structure

PDB id

1C0A (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE E. COLI ASPARTYL-TRNA SYNTHETASE : TRNAASP : ASPARTYL-ADENYLATE COMPLEX

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

G(4SU)AG*UAC*GGG(G7M)UCG*(PSU)C

Length

16 nucleotides

Bulged bases

1C0A|1|B|4SU|608, 1C0A|1|B|C|648

QA status

Modified nucleotides: 4SU, G7M, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_70449.7

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

39

Unit IDs

1C0A|1|B|G|607
1C0A|1|B|4SU|608
1C0A|1|B|A|609
1C0A|1|B|G|610
*
1C0A|1|B|U|625
1C0A|1|B|A|626
1C0A|1|B|C|627
*
1C0A|1|B|G|643
1C0A|1|B|G|644
1C0A|1|B|G|645
1C0A|1|B|G7M|646
1C0A|1|B|U|647
1C0A|1|B|C|648
1C0A|1|B|G|649
*
1C0A|1|B|PSU|665
1C0A|1|B|C|666

Current chains

Chain B

ASPARTYL TRNA

Nearby chains

Chain A

ASPARTYL TRNA SYNTHETASE