J4_1EFW_001
3D structure
- PDB id
- 1EFW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aspartyl-tRNA synthetase from Thermus thermophilus complexed to tRNAasp from Escherichia coli
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- G(4SU)AG*UAC*GGG(G7M)UCG*(PSU)C
- Length
- 16 nucleotides
- Bulged bases
- 1EFW|1|C|4SU|8, 1EFW|1|C|U|47, 1EFW|1|C|C|48
- QA status
- Modified nucleotides: 4SU, G7M, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_1EFW_001 not in the Motif Atlas
- Homologous match to J4_4WJ4_001
- Geometric discrepancy: 0.1922
- The information below is about J4_4WJ4_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.29
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 54
Unit IDs
1EFW|1|C|G|7
1EFW|1|C|4SU|8
1EFW|1|C|A|9
1EFW|1|C|G|10
*
1EFW|1|C|U|25
1EFW|1|C|A|26
1EFW|1|C|C|27
*
1EFW|1|C|G|43
1EFW|1|C|G|44
1EFW|1|C|G|45
1EFW|1|C|G7M|46
1EFW|1|C|U|47
1EFW|1|C|C|48
1EFW|1|C|G|49
*
1EFW|1|C|PSU|65
1EFW|1|C|C|66
Current chains
- Chain C
- ASPARTYL-TRNA
Nearby chains
- Chain A
- ASPARTYL-TRNA SYNTHETASE
Coloring options: