J4_1EFW_002

3D structure

PDB id

1EFW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of aspartyl-tRNA synthetase from Thermus thermophilus complexed to tRNAasp from Escherichia coli

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

G(4SU)AG*UAC*GGG(G7M)UCG*(PSU)C

Length

16 nucleotides

Bulged bases

1EFW|1|D|4SU|8, 1EFW|1|D|U|47, 1EFW|1|D|C|48

QA status

Modified nucleotides: 4SU, G7M, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1EFW_002 not in the Motif Atlas

Homologous match to J4_7EQJ_002

Geometric discrepancy: 0.2051

The information below is about J4_7EQJ_002

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_58311.1

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

30

Unit IDs

1EFW|1|D|G|7
1EFW|1|D|4SU|8
1EFW|1|D|A|9
1EFW|1|D|G|10
*
1EFW|1|D|U|25
1EFW|1|D|A|26
1EFW|1|D|C|27
*
1EFW|1|D|G|43
1EFW|1|D|G|44
1EFW|1|D|G|45
1EFW|1|D|G7M|46
1EFW|1|D|U|47
1EFW|1|D|C|48
1EFW|1|D|G|49
*
1EFW|1|D|PSU|65
1EFW|1|D|C|66

Current chains

Chain D

ASPARTYL-TRNA

Nearby chains

Chain B

ASPARTYL-TRNA SYNTHETASE