J4_1FFK_005

3D structure

PDB id

1FFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CG*UC*GG*CG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1FFK_005 not in the Motif Atlas

Homologous match to J4_4V9F_006

Geometric discrepancy: 0.1147

The information below is about J4_4V9F_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_75575.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

7

Unit IDs

1FFK|1|0|C|1551
1FFK|1|0|G|1552
*
1FFK|1|0|U|1569
1FFK|1|0|C|1570
*
1FFK|1|0|G|1627
1FFK|1|0|G|1628
*
1FFK|1|0|C|1633
1FFK|1|0|G|1634

Current chains

Chain 0

23S RRNA

Nearby chains