3D structure

PDB id
1FKA (explore in PDB, NAKB, or RNA 3D Hub)
Description
STRUCTURE OF FUNCTIONALLY ACTIVATED SMALL RIBOSOMAL SUBUNIT AT 3.3 A RESOLUTION
Experimental method
X-RAY DIFFRACTION
Resolution
3.3 Å

Loop

Sequence
CGCUGGC*GCUUG*CUGAACCCGGGACGAAACCCCCGACGAGGGGACUGACGGUACCGGGGUAAUAGCG*CGCGAGCG
Length
75 nucleotides
Bulged bases
1FKA|1|A|U|401, 1FKA|1|A|A|443, 1FKA|1|A|A|455, 1FKA|1|A|A|458, 1FKA|1|A|C|464, 1FKA|1|A|G|469, 1FKA|1|A|G|470, 1FKA|1|A|U|471, 1FKA|1|A|U|479, 1FKA|1|A|A|480, 1FKA|1|A|A|481, 1FKA|1|A|U|482, 1FKA|1|A|A|483, 1FKA|1|A|G|530
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

1FKA|1|A|C|35
1FKA|1|A|G|36
1FKA|1|A|C|37
1FKA|1|A|U|38
1FKA|1|A|G|39
1FKA|1|A|G|40
1FKA|1|A|C|41
*
1FKA|1|A|G|398
1FKA|1|A|C|399
1FKA|1|A|U|400
1FKA|1|A|U|401
1FKA|1|A|G|402
*
1FKA|1|A|C|432
1FKA|1|A|U|433
1FKA|1|A|G|434
1FKA|1|A|A|435
1FKA|1|A|A|436
1FKA|1|A|C|437
1FKA|1|A|C|438
1FKA|1|A|C|439
1FKA|1|A|G|440
1FKA|1|A|G|441
1FKA|1|A|G|442
1FKA|1|A|A|443
1FKA|1|A|C|444
1FKA|1|A|G|445
1FKA|1|A|A|446
1FKA|1|A|A|447
1FKA|1|A|A|448
1FKA|1|A|C|449
1FKA|1|A|C|450
1FKA|1|A|C|451
1FKA|1|A|C|452
1FKA|1|A|C|453
1FKA|1|A|G|454
1FKA|1|A|A|455
1FKA|1|A|C|456
1FKA|1|A|G|457
1FKA|1|A|A|458
1FKA|1|A|G|459
1FKA|1|A|G|460
1FKA|1|A|G|461
1FKA|1|A|G|462
1FKA|1|A|A|463
1FKA|1|A|C|464
1FKA|1|A|U|465
1FKA|1|A|G|466
1FKA|1|A|A|467
1FKA|1|A|C|468
1FKA|1|A|G|469
1FKA|1|A|G|470
1FKA|1|A|U|471
1FKA|1|A|A|472
1FKA|1|A|C|473
1FKA|1|A|C|474
1FKA|1|A|G|475
1FKA|1|A|G|476
1FKA|1|A|G|477
1FKA|1|A|G|478
1FKA|1|A|U|479
1FKA|1|A|A|480
1FKA|1|A|A|481
1FKA|1|A|U|482
1FKA|1|A|A|483
1FKA|1|A|G|484
1FKA|1|A|C|485
1FKA|1|A|G|486
*
1FKA|1|A|C|527
1FKA|1|A|G|528
1FKA|1|A|C|529
1FKA|1|A|G|530
1FKA|1|A|A|531
1FKA|1|A|G|532
1FKA|1|A|C|533
1FKA|1|A|G|534

Current chains

Chain A
16S RIBOSOMAL RNA

Nearby chains

Chain D
30S RIBOSOMAL PROTEIN S4
Chain L
30S RIBOSOMAL PROTEIN S12
Chain P
30S RIBOSOMAL PROTEIN S16

Coloring options:

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